Feature Analysis
With the re-implemented pipeline, we replicate the analysis done in Biswas et al, comparing various protein feature representations with some additional comparisons: UniRep, various different evotuned weights (eUniReps), local evotuned, one-hot encodings of the full amino acid sequence, and reduced dimension representations by PCA of all of the above. This served to evaluate if eUniRep is necessary and functional across different new proteins and functions we seek to optimize.