Data Accessibility

Raw sequence data have been submitted to the European Nucleotide Archive (ENA) database under the Bioproject number PRJEB37525, with accession numbers ERS4399743 (Cercozoa) and ERS4399744 (Oomycota) respectively.
All figures, codes and detailed bioinformatic/statistical methods used in this study are available athttps://github.com/RJauss/FromForestSoilToCanopy, OTU abundance tables will be made publicly available via the GFBio platform.