References
Biddulph, B., Height, N., March, T., Laws, M., Eckermann, P., Reinheimer, J., & Eglinton, J. (2013). Updated on frost pre-breeding research . Paper presented at the Crop update, Perth, Australia.
Bonnett, O. T. (1936). The development of wheat spike. J. Agric. Res., 53 , 445.
Broman, K. W., & Sen, S. (2009). A guide to QTL mapping with R/qtl. London New York: Springer Dordrecht Heidelberg.
Brooking, I. (1976). Male sterility in Sorghum bicolor (L.) moench induced by low night temperature. I. Timing of the stage of sensitivity. Functional Plant Biology, 3 (5), 589-596. doi:https://doi.org/10.1071/PP9760589
Brooking, I. (1979). Male sterility in Sorghum bicolor (L.) moench induced by low night temperature. II. Genotypic differences in sensitivity. Functional Plant Biology, 6 (2), 143-147. doi:https://doi.org/10.1071/PP9790143
Butler, D. G., Cullis, B. R., Gilmour, A. R., Gogel, B. J., & Thompson, R. (2018). ASReml-R reference manual version 4 (Vol. 2 Amberside House, Wood Lane, Hemel Hempstead, HP2 4TP UK.): VSN International Ltd.
Butler, J. D., Byrne, P. F., Mohammadi, V., Chapman, P. L., & Haley, S. D. (2005). Agronomic performance of rht alleles in a spring wheat population across a range of moisture levels. Crop Science, 45 (3), 939-947. doi:10.2135/cropsci2004.0323
Cavanagh, C. R., Chao, S., Wang, S., Huang, B. E., Stephen, S., Kiani, S., . . . Akhunov, E. (2013). Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars. Proceedings of the National Academy of Sciences, 110 (20), 8057-8062. doi:10.1073/pnas.1217133110
Chen, Y., Sidhu, H. S., Kaviani, M., McElroy, M. S., Pozniak, C. J., & Navabi, A. (2019). Application of image-based phenotyping tools to identify QTL for in-field winter survival of winter wheat (Triticum aestivum L.). Theoretical and Applied Genetics . doi:10.1007/s00122-019-03373-6
Cheong, B. E., Ho, W. W. H., Biddulph, B., Wallace, X., Rathjen, T., Rupasinghe, T. W. T., . . . Dolferus, R. (2019). Phenotyping reproductive stage chilling and frost tolerance in wheat using targeted metabolome and lipidome profiling. Metabolomics, 15 (11), 144. doi:10.1007/s11306-019-1606-2
Clarke, K. R., & Gorley, R. N. (2006). Plymouth routines in multivariate ecological research (Version v6). United Kingdom: PRIMER-E Ltd.
Clément, C., Burrus, M., & Audran, J.-C. (1996). Floral organ growth and carbohydrate content during pollen development in Lilium.American Journal of Botany, 83 (4), 459-469. doi:10.1002/j.1537-2197.1996.tb12727.x
Coombes, N. (2018). DiGGer: DiGGer design generator under correlation and blocking (Version 1.0.3). Retrieved from http://nswdpibiom.org/austatgen/software
Crimp, S. J., Zheng, B., Khimashia, N., Gobbett, D. L., Chapman, S., Howden, M., & Nicholls, N. (2016). Recent changes in southern Australian frost occurrence: implications for wheat production risk.Crop and Pasture Science, 67 (8), 801-811, 811. Retrieved from https://doi.org/10.1071/CP16056
Dhillon, T., Pearce, S. P., Stockinger, E. J., Distelfeld, A., Li, C., Knox, A. K., . . . Dubcovsky, J. (2010). Regulation of freezing tolerance and flowering in temperate cereals: the VRN-1connection. Plant Physiology, 153 (4), 1846-1858. doi:10.1104/pp.110.159079
Díaz, A., Zikhali, M., Turner, A. S., Isaac, P., & Laurie, D. A. (2012). Copy number variation affecting the Photoperiod-B1 andVernalization-A1 genes is associated with altered flowering time in wheat (Triticum aestivum ). PLoS ONE, 7 (3), e33234. doi:10.1371/journal.pone.0033234
Eagles, H. A., Wilson, J., Cane, K., Vallance, N., Eastwood, R. F., Kuchel, H., . . . Trevaskis, B. (2016). Frost-tolerance genesFr-A2 and Fr-B2 in Australian wheat and their effects on days to heading and grain yield in lower rainfall environments in southern Australia. Crop and Pasture Science, 67 (2), 119-127, 119. Retrieved from https://doi.org/10.1071/CP15276
Francia, E., Rizza, F., Cattivelli, L., Stanca, A. M., Galiba, G., Tóth, B., . . . Pecchioni, N. (2004). Two loci on chromosome 5H determine low-temperature tolerance in a ‘Nure’ (winter) × ‘Tremois’ (spring) barley map. Theoretical and Applied Genetics, 108 (4), 670-680. doi:10.1007/s00122-003-1468-9
Galiba, G., Quarrie, S. A., Sutka, J., Morgounov, A., & Snape, J. W. (1995). RFLP mapping of the vernalization (Vrn1) and frost resistance (Fr1) genes on chromosome 5A of wheat. Theoretical and Applied Genetics, 90 (7), 1174-1179. doi:10.1007/bf00222940
Galiba, G., Vágújfalvi, A., Li, C., Soltész, A., & Dubcovsky, J. (2009). Regulatory genes involved in the determination of frost tolerance in temperate cereals. Plant Science, 176 (1), 12-19. doi:https://doi.org/10.1016/j.plantsci.2008.09.016
Gawroński, P., Ariyadasa, R., Himmelbach, A., Poursarebani, N., Kilian, B., Stein, N., . . . Schnurbusch, T. (2014). A distorted circadian clock causes early flowering and temperature-dependent variation in spike development in the Eps-3Am mutant of einkorn wheat. Genetics, 196 (4), 1253-1261. doi:10.1534/genetics.113.158444
Harberd, N. P., Belfield, E., & Yasumura, Y. (2009). The Angiosperm gibberellin-GID1-DELLA growth regulatory mechanism: How an “Inhibitor of an Inhibitor” enables flexible response to fluctuating environments.The Plant Cell Online, 21 (5), 1328-1339. doi:10.1105/tpc.109.066969
Hayes, P. M., Blake, T., Chen, T. H. H., Tragoonrung, S., Chen, F., Pan, A., & Liu, B. (1993). Quantitative trait loci on barley (Hordeum vulgare L.) chromosome 7 associated with components of winterhardiness.Genome, 36 (1), 66-71. doi:10.1139/g93-009
Hoogendoorn, J. (1985). A reciprocal F1 monosomic analysis of the genetic control of time of ear emergence, number of leaves and number of spikelets in wheat (Triticum aestivum L.). Euphytica, 34 (2), 545-558. doi:10.1007/bf00022954
Ji, X., Dong, B., Shiran, B., Talbot, M. J., Edlington, J. E., Hughes, T., . . . Dolferus, R. (2011). Control of abscisic acid catabolism and abscisic acid homeostasis is important for reproductive stage stress tolerance in cereals. Plant Physiology, 156 (2), 647-662. doi:10.1104/pp.111.176164
Ji, X., Shiran, B., Wan, J., Lewis, D. C., Jenkins, C. L. D., Condon, A. G., . . . Dolferus, R. (2010). Importance of pre-anthesis anther sink strength for maintenance of grain number during reproductive stage water stress in wheat. Plant, Cell & Environment, 33 (6), 926-942. doi:10.1111/j.1365-3040.2010.02130.x
Kane, N. A., Danyluk, J., Tardif, G., Ouellet, F., Laliberté, J.-F., Limin, A. E., . . . Sarhan, F. (2005). TaVRT-2, a member of the StMADS-11 clade of flowering repressors, is regulated by vernalization and photoperiod in wheat. Plant Physiology, 138 (4), 2354-2363. doi:10.1104/pp.105.061762
Kippes, N., Debernardi, J. M., Vasquez-Gross, H. A., Akpinar, B. A., Budak, H., Kato, K., . . . Dubcovsky, J. (2015). Identification of theVERNALIZATION 4 gene reveals the origin of spring growth habit in ancient wheats from South Asia. Proceedings of the National Academy of Sciences, 112 (39), E5401-E5410. doi:10.1073/pnas.1514883112
Kippes, N., Zhu, J., Chen, A., Vanzetti, L., Lukaszewski, A., Nishida, H., . . . Dubcovsky, J. (2014). Fine mapping and epistatic interactions of the vernalization gene VRN-D4 in hexaploid wheat.Molecular Genetics and Genomics, 289 (1), 47-62. doi:10.1007/s00438-013-0788-y
Knox, A. K., Li, C., Vágújfalvi, A., Galiba, G., Stockinger, E. J., & Dubcovsky, J. (2008). Identification of candidate CBF genes for the frost tolerance locus Fr-Am2 in Triticummonococcum.Plant Molecular Biology, 67 (3), 257-270. doi:10.1007/s11103-008-9316-6
Koonjul, P. K., Minhas, J. S., Nunes, C., Sheoran, I. S., & Saini, H. S. (2004). Selective transcriptional down-regulation of anther invertases precedes the failure of pollen development in water-stressed wheat. Journal of Experimental Botany, 56 (409), 179-190. doi:10.1093/jxb/eri018
Li, C., & Dubcovsky, J. (2008). Wheat FT protein regulates VRN1transcription through interactions with FDL2. The Plant Journal, 55 (4), 543-554. doi:10.1111/j.1365-313X.2008.03526.x
Li, H., Ye, G., & Wang, J. (2007). A modified algorithm for the improvement of composite interval mapping. Genetics, 175 (1), 361-374. doi:10.1534/genetics.106.066811
Li, S., Wang, J., & Zhang, L. (2015). Inclusive composite interval mapping of QTL by environment interactions in biparental populations.PLoS ONE, 10 (7), e0132414-e0132414. doi:10.1371/journal.pone.0132414
Limin, A. E., & Fowler, D. B. (2002). Developmental traits affecting low‐temperature tolerance response in near‐isogenic lines for the vernalization locus Vrn‐A1 in wheat (Triticum aestivum L. em Thell). Annals of Botany, 89 (5), 579-585. doi:10.1093/aob/mcf102
Liu, W., Maurer, H. P., Li, G., Tucker, M. R., Gowda, M., Weissmann, E. A., & Hahn, V. (2014). Genetic architecture of winter hardiness and frost tolerance in triticale. PLoS ONE 9(6): e99848.doi:https://doi.org/10.1371/journal.pone.0099848
Manly, K. F., Cudmore, J. R. H., & Meer, J. M. (2001). Map Manager QTX, cross-platform software for genetic mapping. Mammalian Genome, 12 (12), 930-932. doi:10.1007/s00335-001-1016-3
Nazim Ud Dowla, M. A. N., Edwards, I., O’Hara, G., Islam, S., & Ma, W. (2018). Developing wheat for improved yield and adaptation under a changing climate: optimization of a few key genes. Engineering, 4 (4), 514-522. doi:https://doi.org/10.1016/j.eng.2018.06.005
Nemoto, Y., Kisaka, M., Fuse, T., Yano, M., & Ogihara, Y. (2003). Characterization and functional analysis of three wheat genes with homology to the CONSTANS flowering time gene in transgenic rice.The Plant Journal, 36 (1), 82-93. doi:10.1046/j.1365-313X.2003.01859.x
Patterson, H. D., & Thompson, R. (1971). Recovery of inter-block information when block sizes are unequal. Biometrika, 58 (3), 545-554.
Powell, N., Ji, X., Ravash, R., Edlington, J., & Dolferus, R. (2012). Yield stability for cereals in a changing climate. Functional Plant Biology, 39 (7), 539-552. doi:doi.org/10.1071/FP12078
Reinheimer, J. L., Barr, A. R., & Eglinton, J. K. (2004). QTL mapping of chromosomal regions conferring reproductive frost tolerance in barley (Hordeum vulgare L.). Theoretical and Applied Genetics, 109 (6), 1267-1274. doi:10.1007/s00122-004-1736-3
Rohlf, F. J. (2009). Numerical Taxonomy and Multivariate Analysis System (Version 2.2). New York: Applied Biostatistics Inc.
Saini, H. S., & Aspinall, D. (1981). Effect of water deficit on sporogenesis in wheat (Triticum aestivum L.). Annals of Botany, 48 (5), 623-633. doi:10.1093/oxfordjournals.aob.a086170
Sawa, M., Nusinow, D. A., Kay, S. A., & Imaizumi, T. (2007). FKF1 and GIGANTEA complex formation is required for day-length measurement inArabidopsis . Science, 318 (5848), 261-265. doi:10.1126/science.1146994
Scarth, R., & Law, C. N. (1983). The location of the photoperiod gene,Ppd2 and an additional genetic factor for ear-emergence time on chromosome 2B of wheat. Heredity, 51 (3), 607-619. Retrieved from http://dx.doi.org/10.1038/hdy.1983.73
Shi, C., Zhao, L., Zhang, X., Lv, G., Pan, Y., & Chen, F. (2019). Gene regulatory network and abundant genetic variation play critical roles in heading stage of polyploidy wheat. BMC Plant Biology, 19 (1), 6. doi:10.1186/s12870-018-1591-z
Shitsukawa, N., Ikari, C., Shimada, S., Kitagawa, S., Sakamoto, K., Saito, H., . . . Murai, K. (2007). The einkorn wheat (Triticum monococcum ) mutant, maintained vegetative phase, is caused by a deletion in the VRN1 gene. Genes & Genetic Systems, 82 , 167-170.
Sieber, A.-N., Longin, C. F. H., Leiser, W. L., & Würschum, T. (2016). Copy number variation of CBF-A14 at the Fr-A2 locus determines frost tolerance in winter durum wheat. Theoretical and Applied Genetics, 129 (6), 1087-1097. doi:10.1007/s00122-016-2685-3
Snape, J. W., Sarma, R., Quarrie, S. A., Fish, L., Galiba, G., & Sutka, J. (2001). Mapping genes for flowering time and frost tolerance in cereals using precise genetic stocks. Euphytica, 120 (3), 309-315. doi:10.1023/a:1017541505152
Sutka, J. (2001). Genes for frost resistance in wheat. Euphytica, 119 (1), 169-177. doi:10.1023/a:1017520720183
Sutka, J., & Snape, J. W. (1989). Location of a gene for frost resistance on chromosome 5A of wheat. Euphytica, 42 (1), 41-44. doi:10.1007/bf00042613
Tóth, B., Galiba, G., Fehér, E., Sutka, J., & Snape, J. W. (2003). Mapping genes affecting flowering time and frost resistance on chromosome 5B of wheat. Theoretical and Applied Genetics, 107 (3), 509-514. doi:10.1007/s00122-003-1275-3
Wang, J., Wen, W., Hanif, M., Xia, X., Wang, H., Liu, S., . . . He, Z. (2016). TaELF3-1DL , a homolog of ELF3 , is associated with heading date in bread wheat. Molecular Breeding, 36 (12), 161. doi:10.1007/s11032-016-0585-5
Yan, L., Fu, D., Li, C., Blechl, A., Tranquilli, G., Bonafede, M., . . . Dubcovsky, J. (2006). The wheat and barley vernalization geneVRN3 is an orthologue of FT . Proceedings of the National Academy of Sciences, 103 (51), 19581-19586. doi:10.1073/pnas.0607142103
Zhang, J., Dell, B., Biddulph, B., Drake-Brockman, F., Walker, E., Khan, N., . . . Appels, R. (2013). Wild-type alleles of Rht-B1 andRht-D1 as independent determinants of thousand-grain weight and kernel number per spike in wheat. Molecular Breeding, 32 (4), 771-783. doi:10.1007/s11032-013-9905-1
Zhang, J., Dell, B., Biddulph, B., Khan, N., Xu, Y., Luo, H., & Appels, R. (2014). Vernalization gene combination to maximize grain yield in bread wheat (Triticum aestivum L.) in diverse environments.Euphytica, 198 (3), 439-454. doi:10.1007/s10681-014-1120-6
Zhang, J., Huang, S., Fosu-Nyarko, J., Dell, B., McNeil, M., Waters, I., . . . Appels, R. (2008). The genome structure of the 1-FEH genes in wheat (Triticum aestivum L.): new markers to track stem carbohydrates and grain filling QTLs in breeding. Molecular Breeding, 22 (3), 339-351. doi:10.1007/s11032-008-9179-1
Zhao, X. Y., Liu, M. S., Li, J. R., Guan, C. M., & Zhang, X. S. (2005). The wheat TaGI1 , involved in photoperiodic flowering, encodesanArabidopsis GI ortholog. Plant Molecular Biology, 58 (1), 53-64. doi:10.1007/s11103-005-4162-2
Zheng, B., Chapman, S., Christopher, J., Frederiks, T., & Chenu, K. (2015). Frost trends and their estimated impact on yield in the Australian wheatbelt. Procedia Environmental Sciences, 29 , 171-172. doi:https://doi.org/10.1016/j.proenv.2015.07.244
Zheng, B., Chenu, K., & Chapman, S. C. (2016). Velocity of temperature and flowering time in wheat – assisting breeders to keep pace with climate change. Global Change Biology, 22 (2), 921-933. doi:10.1111/gcb.13118
Zikhali, M., Leverington-Waite, M., Fish, L., Simmonds, J., Orford, S., Wingen, L. U., . . . Griffiths, S. (2014). Validation of a 1DLearliness per se (eps ) flowering QTL in bread wheat (Triticum aestivum ). Molecular Breeding, 34 (3), 1023-1033. doi:10.1007/s11032-014-0094-3
Zikhali, M., Wingen, L. U., Leverington-Waite, M., Specel, S., & Griffiths, S. (2017). The identification of new candidate genes Triticum aestivum FLOWERING LOCUS T3-B1 (TaFT3-B1) and TARGET OF EAT1 (TaTOE1-B1) controlling the short-day photoperiod response in bread wheat.Plant, Cell & Environment, 40 (11), 2678-2690. doi:10.1111/pce.13018