End of Methods: bits of text from Matthew that I had re-organised above are included below for future reference:

Text from Matthew that I re-ordered for clarity:
In the consensus cluster, genes that failed to be paired with at least one other gene in all clusters within Col-0, Ler, prr579phyABHsfQk at 22 oC samples were removed and the remaining included. From the DE analysis, genes with significant DE were included. Within the resulting candidate list, genes of lowly or no expression across the samples Col-0, Ler, prr579phyABHsfQk at 22 oC were removed from the list.