Network inference on the curated gene list was performed using dynGENIE3 R package \cite{Huynh-Thu2018}. For each gene, the time-course gene expression was supplied from the following samples: Col-0/Ler/prr579/phyABcry12/HsfQk at 22oC and Col-0/Ler/prr579/phyABcry12 at 27oC. For downstream analysis of network, only edges that had scores within the top 1% and that were consistent with DAP-seq data \cite{O_Malley_2016} were included. GO term enrichment within the network was determined using the PAFway package (CITE). Figures were drawn using the network visualisation tools developed for Ara-BOX-cis \cite{Ezer2017a}.