The images created were synced to the local computer and downloaded to the desktop so they could be easily viewed.  The template image generated from the participants was also copied to the desktop, to be used in overlay comparisons.  Contrast image files demonstrating where cortical thickness is greater in TBI patients than in OI patients, and vice versa, are now available after being created through the ANTs pipeline using the contrast matrix.  They were viewed in the FSLview program, and the code to import files from the desktop for viewing follows.  The brain template image and the respective contrast images were loaded into this program, and each contrast image was overlaid on the template to analyze statistical significance of cortical thickness differences in TBI vs OI groups, and OI vs TBI groups.  The threshold for significance in this program was set to 0.95 to 1, a commonly accepted significance level.  The code was ran twice to view where cortical thickness may be greater for both distinct groups, once with each of the corrected p-value t-statistic files.