Main Data History
Show Index Toggle 0 comments
  •  Quick Edit
  • 扒肉条


    1. Eric S Lander, David Botstein. Mapping mendelian factors underlying quantitative traits using RFLP linkage maps.. Genetics 121, 185–199 (1989).

    2. H Benjamin Larman, Anthony C Liang, Stephen J Elledge, Jian Zhu. Discovery of protein interactions using parallel analysis of translated ORFs (PLATO). Nat Protoc 9, 90–103 (2013). Link

    3. RJ Lebowitz, M Soller, JS Beckmann. Trait-based analyses for the detection of linkage between marker loci and quantitative trait loci in crosses between inbred lines. Theoretical and Applied Genetics 73, 556–562 (1987).

    4. H. Y. Lee, C. H. Bowen, G. V. Popescu, H.-G. Kang, N. Kato, S. Ma, S. Dinesh-Kumar, M. Snyder, S. C. Popescu. Arabidopsis RTNLB1 and RTNLB2 Reticulon-Like Proteins Regulate Intracellular Trafficking and Activity of the FLS2 Immune Receptor. THE PLANT CELL ONLINE 23, 3374–3391 (2011). Link

    5. Young-Pyo Lee, Youngcho Cho, Sunggil Kim. A high-resolution linkage map of the Rfd1 a restorer-of-fertility locus for cytoplasmic male sterility in radish (Raphanus sativus L.) produced by a combination of bulked segregant analysis and RNA-Seq. Theor Appl Genet 127, 2243–2252 (2014). Link

    6. Lance A Liotta, Virginia Espina, Arpita I Mehta, Valerie Calvert, Kevin Rosenblatt, David Geho, Peter J Munson, Lynn Young, Julia Wulfkuhle, Emanuel F Petricoin. Protein microarrays: Meeting analytical challenges for clinical applications. Cancer Cell 3, 317–325 (2003). Link

    7. S. Liu, H. D. Chen, I. Makarevitch, R. Shirmer, S. J. Emrich, C. R. Dietrich, W. B. Barbazuk, N. M. Springer, P. S. Schnable. High-Throughput Genetic Mapping of Mutants via Quantitative Single Nucleotide Polymorphism Typing. Genetics 184, 19–26 (2009). Link

    8. Sanzhen Liu, Cheng-Ting Yeh, Ho Man Tang, Dan Nettleton, Patrick S. Schnable. Gene Mapping via Bulked Segregant RNA-Seq (BSR-Seq). PLoS ONE 7, e36406 (2012). Link

    9. Wing-Yee Liu, Jin-Ho Kang, Hyeon-Seok Jeong, Hye-Jeong Choi, Hee-Bum Yang, Ki-Taek Kim, Doil Choi, Gyung Ja Choi, Molly Jahn, Byoung-Cheorl Kang. Combined use of bulked segregant analysis and microarrays reveals SNP markers pinpointing a major QTL for resistance to Phytophthora capsici in pepper. Theor Appl Genet 127, 2503–2513 (2014). Link

    10. Maren Livaja, Yu Wang, Silke Wieckhorst, Grit Haseneyer, Michael Seidel, Volker Hahn, Steven J Knapp, Stefan Taudien, Chris-Carolin Schön, Eva Bauer. BSTA: a targeted approach combines bulked segregant analysis with next- generation sequencing and de novo transcriptome assembly for SNP discovery in sunflower. BMC Genomics 14, 628 (2013). Link

    11. Hongfeng Lu, Tao Lin, Joël Klein, Shenhao Wang, Jianjian Qi, Qian Zhou, Jinjing Sun, Zhonghua Zhang, Yiqun Weng, Sanwen Huang. QTL-seq identifies an early flowering QTL located near Flowering Locus T in cucumber. Theor Appl Genet 127, 1491–1499 (2014). Link

    12. Angelika Lueking, Dolores J. Cahill, Stefan Müllner. Protein biochips: A new and versatile platform technology for molecular medicine. Drug Discovery Today 10, 789–794 (2005). Link

    13. Paul M. Magwene, John H. Willis, John K. Kelly. The Statistics of Bulk Segregant Analysis Using Next Generation Sequencing. PLoS Comput Biol 7, e1002255 (2011). Link

    14. Ping-Chang Yang, Zhi-Qiang Liu, Tahrin Mahmood. Western blot: Technique theory and trouble shooting. North American Journal of Medical Sciences 6, 160 (2014). Link

    15. Belén Méndez-Vigo, Nasr H. Gomaa, Carlos Alonso-Blanco, F. Xavier Picó. Among- and within-population variation in flowering time of Iberian Arabidopsis thaliana estimated in field and glasshouse conditions. New Phytologist 197, 1332–1343 (2012). Link

    16. R. W. Michelmore, I. Paran, R. V. Kesseli. Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations.. Proceedings of the National Academy of Sciences 88, 9828–9832 (1991). Link

    17. Shane Miersch, Joshua LaBaer. Nucleic Acid Programmable Protein Arrays: Versatile Tools for Array-Based Functional Protein Studies. Current Protocols in Protein Science 27–2 (2011).

    18. G. P. Morris, P. Ramu, S. P. Deshpande, C. T. Hash, T. Shah, H. D. Upadhyaya, O. Riera-Lizarazu, P. J. Brown, C. B. Acharya, S. E. Mitchell, J. Harriman, J. C. Glaubitz, E. S. Buckler, S. Kresovich. Population genomic and genome-wide association studies of agroclimatic traits in sorghum. Proceedings of the National Academy of Sciences 110, 453–458 (2012). Link

    19. Atsushi J Nagano, Yutaka Sato, Motohiro Mihara, Baltazar A Antonio, Ritsuko Motoyama, Hironori Itoh, Yoshiaki Nagamura, Takeshi Izawa. Deciphering and prediction of transcriptome dynamics under fluctuating field conditions. Cell 151, 1358–1369 (2012).

    20. Tommy Nilsson, Matthias Mann, Ruedi Aebersold, John R Yates, Amos Bairoch, John J M Bergeron. Mass spectrometry in high-throughput proteomics: ready for the big time. Nature Methods 7, 681–685 (2010). Link

    21. Zhibin Ning, Hu Zhou, Fangjun Wang, Mohamed Abu-Farha, Daniel Figeys. Analytical aspects of proteomics: 2009–2010. Analytical chemistry 83, 4407–4426 (2011).

    22. Fatih Ozsolak, Patrice M Milos. RNA sequencing: advances, challenges and opportunities. Nature reviews genetics 12, 87–98 (2011).

    23. O. V Patel, A. Bettegowda, J. J Ireland, P. M Coussens, P. Lonergan, G. W Smith. Functional genomics studies of oocyte competence: evidence that reduced transcript abundance for follistatin is associated with poor developmental competence of bovine oocytes. Reproduction 133, 95–106 (2007). Link

    24. Joao A. Paulo, Fiona E. McAllister, Robert A. Everley, Sean A. Beausoleil, Alexander S. Banks, Steven P. Gygi. Effects of MEK inhibitors GSK1120212 and PD0325901 in vivo using 10-plex quantitative proteomics and phosphoproteomics. Proteomics 15, 462–473 (2014). Link

    25. M. Pizza. Identification of Vaccine Candidates Against Serogroup B Meningococcus by Whole-Genome Sequencing. Science 287, 1816–1820 (2000). Link

    26. Jesse A Poland, Trevor W Rife. Genotyping-by-sequencing for plant breeding and genetics. The Plant Genome 5, 92–102 (2012).

    27. S. C. Popescu, G. V. Popescu, S. Bachan, Z. Zhang, M. Seay, M. Gerstein, M. Snyder, S. P. Dinesh-Kumar. Differential binding of calmodulin-related proteins to their targets revealed through high-density Arabidopsis protein microarrays. Proceedings of the National Academy of Sciences 104, 4730–4735 (2007). Link

    28. Sorina C Popescu, George V Popescu, Shawn Bachan, Zimei Zhang, Mark Gerstein, Michael Snyder, Savithramma P Dinesh-Kumar. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Genes & development 23, 80–92 (2009).

    29. Thierry Rabilloud, Mireille Chevallet, Sylvie Luche, Cécile Lelong. Two-dimensional gel electrophoresis in proteomics: Past present and future. Journal of Proteomics 73, 2064–2077 (2010). Link

    30. Ricardo H. Ramirez-Gonzalez, Vanesa Segovia, Nicholas Bird, Paul Fenwick, Sarah Holdgate, Simon Berry, Peter Jack, Mario Caccamo, Cristobal Uauy. RNA-Seq bulked segregant analysis enables the identification of high-resolution genetic markers for breeding in hexaploid wheat. Plant Biotechnol J 13, 613–624 (2014). Link

    31. Thamalampudi Venkata Reddy, Samresh Dwivedi, Navin Kumar Sharma. Development of TILLING by sequencing platform towards enhanced leaf yield in tobacco. Industrial Crops and Products 40, 324–335 (2012). Link

    32. Christian Riedelsheimer, Angelika Czedik-Eysenberg, Christoph Grieder, Jan Lisec, Frank Technow, Ronan Sulpice, Thomas Altmann, Mark Stitt, Lothar Willmitzer, Albrecht E Melchinger. Genomic and metabolic prediction of complex heterotic traits in hybrid maize. Nature Genetics 44, 217–220 (2012). Link

    33. Laura Rodriguez-Uribe, Sarah M Higbie, James McD Stewart, Thea Wilkins, W Lindemann, C Sengupta-Gopalan, Jinfa Zhang. Identification of salt responsive genes using comparative microarray analysis in Upland cotton (Gossypium hirsutum L.). Plant Science 180, 461–469 (2011).

    34. P. L. Ross. Multiplexed Protein Quantitation in Saccharomyces cerevisiae Using Amine-reactive Isobaric Tagging Reagents. Molecular & Cellular Proteomics 3, 1154–1169 (2004). Link

    35. Jean-Marc Routaboul, Christian Dubos, Gilles Beck, Catherine Marquis, Przemyslaw Bidzinski, Olivier Loudet, Loïc Lepiniec. Metabolite profiling and quantitative genetics of natural variation for flavonoids in Arabidopsis. Journal of experimental botany 63, 3749–3764 (2012).

    36. C Schlötterer, R Tobler, R Kofler, V Nolte. Sequencing pools of individuals - mining genome-wide polymorphism data without big funding.. Nat Rev Genet 15, 749-63 (2014).

    37. K Schneeberger. Using next-generation sequencing to isolate mutant genes from forward genetic screens.. Nat Rev Genet 15, 662-76 (2014).

    38. Korbinian Schneeberger, Stephan Ossowski, Christa Lanz, Trine Juul, Annabeth Høgh Petersen, Kåre Lehmann Nielsen, Jan-Elo Jørgensen, Detlef Weigel, Stig Uggerhø Andersen. SHOREmap: simultaneous mapping and mutation identification by deep sequencing. Nature Methods 6, 550–551 (2009).

    39. M. Soller, J.S. Beckmann. Marker-based mapping of quantitative trait loci using replicated progenies. Theoret. Appl. Genetics 80 (1990). Link

    40. Tamara Steijger, Josep F Abril, Pär G Engström, Felix Kokocinski, Tim J Hubbard, Roderic Guigó, Jennifer Harrow, Paul Bertone, RGASP Consortium, others. Assessment of transcript reconstruction methods for RNA-seq. Nature methods 10, 1177–1184 (2013).

    41. Yanping Sun, Jiankang Wang, Jonathan H Crouch, Yunbi Xu. Efficiency of selective genotyping for genetic analysis of complex traits and potential applications in crop improvement. Molecular Breeding 26, 493–511 (2010).

    42. Hiroki Takagi, Aiko Uemura, Hiroki Yaegashi, Muluneh Tamiru, Akira Abe, Chikako Mitsuoka, Hiroe Utsushi, Satoshi Natsume, Hiroyuki Kanzaki, Hideo Matsumura, Hiromasa Saitoh, Kentaro Yoshida, Liliana M. Cano, Sophien Kamoun, Ryohei Terauchi. MutMap-Gap: whole-genome resequencing of mutant F2 progeny bulk combined with de novo assembly of gap regions identifies the rice blast resistance gene Pii. New Phytologist 200, 276–283 (2013). Link

    43. Hiroki Takagi, Akira Abe, Kentaro Yoshida, Shunichi Kosugi, Satoshi Natsume, Chikako Mitsuoka, Aiko Uemura, Hiroe Utsushi, Muluneh Tamiru, Shohei Takuno, others. QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations. The Plant Journal 74, 174–183 (2013).