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Towards the fully automated monitoring of ecological communities
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  • Marc Besson,
  • Jamie Alison,
  • Kim Bjerge,
  • Thomas Gorochowski,
  • Toke Høye,
  • Tommaso Jucker,
  • Hjalte Mann,
  • Christopher Clements
Marc Besson
University of Bristol

Corresponding Author:[email protected]

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Jamie Alison
Aarhus University
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Kim Bjerge
Aarhus University
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Thomas Gorochowski
University of Bristol
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Toke Høye
Aarhus University
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Tommaso Jucker
University of Bristol
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Hjalte Mann
Aarhus Universitet
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Christopher Clements
University of Bristol
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High resolution monitoring is fundamental to understand and predict the dynamics of ecological communities in an era of global change and biodiversity declines. While real-time and fully automated monitoring of the abiotic components of ecosystems has been possible for some time, monitoring the biotic components at different organizational scales, e.g. from individual behaviours and traits to the abundance and distribution of species, is far more challenging. Recent technological advancements offer potential solutions to achieve this through: (i) increasingly affordable high throughput recording hardware, which can collect rich multidimensional data, and (ii) increasingly accessible artificial intelligence approaches, which are able to extract ecological knowledge from large datasets. However, automating the monitoring of facets of ecological populations and communities via such technologies is still in its infancy, being primarily achieved at low spatiotemporal resolutions within specific stages of the monitoring workflow. Here, we review existing technologies for data recording and processing that enable automated monitoring of ecological communities. We then present novel frameworks that combine such technologies, forming fully automated pipelines to detect, track, classify, and count multiple species, and even record behavioural and morphological traits, at resolutions which have previously been impossible to achieve. Based on these rapidly developing technologies, we illustrate a solution to one of the greatest challenges in ecology and conservation: the ability to rapidly generate high resolution, multidimensional, and critically, standardized data across complex ecologies.
22 Apr 2022Submitted to Ecology Letters
22 Apr 2022Submission Checks Completed
22 Apr 2022Assigned to Editor
28 Apr 2022Reviewer(s) Assigned
01 Jun 2022Review(s) Completed, Editorial Evaluation Pending
02 Jun 2022Editorial Decision: Revise Major
29 Jul 20221st Revision Received
10 Aug 2022Submission Checks Completed
10 Aug 2022Assigned to Editor
12 Aug 2022Reviewer(s) Assigned
06 Sep 2022Review(s) Completed, Editorial Evaluation Pending
07 Sep 2022Editorial Decision: Accept