Determination of the proteins and pathways involved in the anti-breast
cancer activity of glycyrrhizin from a bioinformatics point of view
Abstract
The anti-cancer activity of glycyrrhizin (licorice) against various
types of breast cancer (BC) has been reported so far. However, a
complete investigation for understanding the pathways that could be
affected by this herbal compound as an anti-breast cancer agent has not
been performed yet. This study tends to investigate the proteins and
pathways involved in the anti-BC activity of glycyrrhizin. For this
purpose, the target genes of glycyrrhizin were obtained from the ChEMBL
database. The BC-associated genes for three kinds of BC were retrieved
from DisGeNET. The target genes of glycyrrhizin and the BC-associated
genes were compared, and the genes with disease specificity index (DSI
> 0.6) were selected for further evaluation using in
silico methods and bioinformatics tools. The protein-protein
interaction (PPI) network was constructed, and Gene Ontology (GO) and
Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways were analyzed.
The results revealed 80 common genes among the glycyrrhizin target genes
and breast carcinoma-associated genes. Ten genes had a DSI greater than
0.6. The binding affinity of glycyrrhizin to these proteins and binding
characteristics were assessed using molecular docking and binding free
energy calculations (MM/GBSA). POLK, TBXAS1, and ADRA1A showed the
highest binding affinity with -8.9, -9.3, and -9.6 kcal/mol,
respectively. ErbB signaling pathway and PD-L1 expression and PD-1
checkpoint pathway in cancer are the potent pathways for the anti-BC
activity of glycyrrhizin. By affecting the obtained targets and
modulating the mentioned pathways, glycyrrhizin can influence and
control BC efficiently.