Comparative Genomic Analysis of Halophilic and Xerophilic Microbes to
Elucidate Adaptions to Chaotropic and Low Water Activity Environments
Abstract
Challenges posed by chaotropic environments are difficult for life as
they decrease water activity and disrupt fundamental cellular functions.
Chaotropes, like magnesium chloride, disrupt hydrogen bonding between
water molecules deteriorating the hydrophobic properties of membranes,
nucleic acids, and proteins; leading to cell death. Extremely chaotropic
environments on Earth, such as MgCl2 saturated deep-sea hypersaline
anoxic basins (DHABs) also provide windows to interplanetary bodies such
as Martian brines, and the deep subsurface oceans on the frozen moons of
Enceladus, Titan, and Europa. Therefore, studying the microbiome of
DHABs and other chaotropic environments are essential in the field of
astrobiology. However, research of microbial adaptations in these harsh
conditions is lacking. The purpose of this study is to identify genes
associated with adaptation in chaotropic and low water activity
environments. Published genomes of chao-tolerant microbes on the
Integrated Microbial Genomes (IMG) web-based platform will be analyzed
using comparative genomics approaches to differentiate between essential
and inconsequential genes to distinguish chaophilic and xerophilic
adaptations. In particular, the genomes of Halobacterium salinarum NRC-1
and Haloquadratum walsbyi C23, globally distributed halophiles found in
brines and salterns that have vastly different chao-tolerances, will be
compared and analyzed using PATRIC, an integrated genomic analysis tool.
The goal of this study is to identify genes and cellular mechanisms that
could confer adaptation to chaotropic conditions. Further study of life
in chaotropic and low water activity brines such as DHABs has the
potential to broaden the limits of life on Earth, and elsewhere.